FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948933

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948933
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1459921
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT284751.9504480036933507No Hit
GGCTTGCGACGACATT124570.8532653479195107No Hit
AAATAGGTGTTGCGTA123340.8448402345058398No Hit
TATCACTACTGGTCCG106110.7268201498574237No Hit
ATGGGTTACCATGCGC102640.7030517404708886No Hit
CTAATCTTGCCACTTC68390.46845000517151275No Hit
GTGTTGTGAGGGTAGT65950.4517367720582141No Hit
AGAGAATTGCCTCCTA58930.4036519784289698No Hit
CTGCTTTCTCCACTTC58910.4035149847149264No Hit
AGCCGAGCTGCCCTTT44030.3015916614666136No Hit
CTGGCCAGAGGAATGC43600.29864629661467984No Hit
AATGGTGCTTCGTACA39960.2737134406587754No Hit
GGGGGGGGGGGGGGGG39310.26926114495236386No Hit
GCTCCTAACCTATCTT35010.23980749643302615No Hit
TCCCTGTGACCCGCAA34710.23775259072237473No Hit
CTTAATCTGGGAATTA29280.20055879735958315No Hit
TGCCGTTACAATCTGC28870.1977504262216928No Hit
GAGAGAAGACTCACGG28590.19583251422508477No Hit
TTGTCAACTAATACAG27940.19138021851867326No Hit
GCTGTTCTGATAGGTA27790.19035276566334752No Hit
TCTTTCCACCGAGTGA27280.18685942595524005No Hit
TAGCGCGACAAGACAT26290.18007823711009022No Hit
GTAATCGTGATCCTCC25490.17459848854835294No Hit
TCGTATACTTTCTGGA25250.1729545639798318No Hit
AGTCCTGCTCCTAGTA24970.17103665198322374No Hit
GGGATGTGAAGGTGCA24040.1646664442802042No Hit
TTGCGTCACCACTCAA22390.15336446287162112No Hit
GCAAATCTGGAATTGA22370.1532274691575777No Hit
TGCAATGACACCTTGA22140.15165204144607825No Hit
GTTGTTGGATTCCATT21200.14521333688603696No Hit
TGTCAATCTGGTGTCC21120.14466536202986324No Hit
CCTTTCTACTCGGGCT19980.1368567203293877No Hit
GGTTGAACTTCTTTGT19660.13466482090469278No Hit
TACAACCGATCGCTAA19080.1306920031974333No Hit
TTGTTTGTGGCGCTGT18540.12699317291826065No Hit
TACGCCTTGCTGATCA18530.12692467606123894No Hit
CCTTTCTACTCATTTC18130.1241848017803703No Hit
CCCACCTCTCATGATC17960.12302035521100113No Hit
TTCCACTCTCGAATCT17710.12130793378545826No Hit
CAAGTGGGATAGCGAG17500.11986949978800222No Hit
CTGCCATTGTCTTTGT17370.11897904064671994No Hit
TAAGGGCGATTTCTTG17280.1183625689335245No Hit
AGAACGCGAGGAGTCA17250.11815707836245934No Hit
TCTTTCCACTTCGCAA16880.11562269465265587No Hit
AATCCAGACTACCAAC16790.11500622293946043No Hit
GCTCCTAACGAATAGT16490.11295131722880895No Hit
CGGAATTTGAGAGGCT15940.1091839900926146No Hit
AGCACATTGCTGGAAG15200.10411522267300764No Hit
CCAGCTTTGGGAATGC15010.10281378238959506No Hit
CGTTTGCTGGCTAATC14630.10021090182276986No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)