FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004948937

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948937
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15498940
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAAGCTC1524775198.37931497250779No Hit
GGAAGCTA479640.3094663247938246No Hit
GGCAGCTC392040.25294633052324866No Hit
GGAAGCAC222780.14373886214154No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)