FastQCFastQC Report
Sat 10 Sep 2022
EGAF00004948944

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948944
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18338760
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTGCGT1791364297.681860714683No Hit
AGCTGCGA649120.3539606821835282No Hit
AGCTGCGG467900.2551426595909429No Hit
AGCAGCGT365130.1991028837282346No Hit
CGCTGCGT297510.16223016169032148No Hit
AGCGGCGT256460.13984587834728193No Hit
ACCTGCGT212790.1160329269808864No Hit
AGCTGCCT183900.10027940820426244No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)