FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948950

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948950
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4029638
Sequences flagged as poor quality0
Sequence length8
%GC24

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAGATTG393307097.60355644849487No Hit
TTAGATTA120750.29965470843782993No Hit
ATAGATTG102700.2548616029529203No Hit
TTAGAATG88760.22026792481111204No Hit
TTAGATTC83610.2074876204760825No Hit
TTACATTG70560.17510257745236668No Hit
TAAGATTG68130.1690722590962265No Hit
TTAGATTT67190.1667395433535221No Hit
TTAGATAG60780.15083240727827163No Hit
TTAGCTTG59580.14785447228758514No Hit
TTATATTG40540.10060457043535921No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)