FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948952

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948952
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3141422
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATTTGG304449196.91442283144384No Hit
CTATTTGA219130.6975503450348283No Hit
CTATTTGC66770.21254705671507998No Hit
CGATTTGG65490.2084724688373609No Hit
CTAATTGG63190.20115094374458445No Hit
CTATATGG60400.19226961547986868No Hit
CTTTTTGG60220.19169662655956443No Hit
CTATTTTG58330.18568024289636986No Hit
CAATTTGG54480.17342464654541795No Hit
ATATTTGG50750.16155104280800223No Hit
CTAGTTGG44800.14261057572016747No Hit
CTATTTCG44450.14149643059735367No Hit
CTATTAGG40440.1287315107616869No Hit
CTATTTGT38780.12344727960776998No Hit
GTATTTGG37660.1198820152147658No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)