FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948957

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948957
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6119172
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGTTT598601297.82388859146303No Hit
GCACGTTA601990.9837768900759776No Hit
GCACGTAT104140.17018642391486952No Hit
GCACGATT93170.15225916186046085No Hit
GCCCGTTT74850.12232047080879571No Hit
GCACGGTT69880.11419845691541275No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)