FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948960

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948960
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6049688
Sequences flagged as poor quality0
Sequence length8
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGGTAAA593363598.08166966627039No Hit
TAGGAAAA187080.30923908803230843No Hit
AAGGTAAA174460.28837850811479865No Hit
TAGCTAAA122950.2032336213041069No Hit
TACGTAAA101830.1683227300316975No Hit
TATGTAAA90840.15015650393871552No Hit
TAGGTAAT66210.10944366056563579No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)