FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948965

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948965
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1583398
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT249651.5766724474831975No Hit
AAATAGGTGTTGCGTA137420.8678803434133427No Hit
GGCTTGCGACGACATT130090.8215874972685326No Hit
TATCACTACTGGTCCG117430.7416328680470734No Hit
ATGGGTTACCATGCGC113310.7156128781266617No Hit
GTGTTGTGAGGGTAGT77570.4898957810986246No Hit
CTAATCTTGCCACTTC73520.46431787838559857No Hit
CTGCTTTCTCCACTTC70270.4437924008998369No Hit
AGAGAATTGCCTCCTA64050.4045097947578562No Hit
CTGGCCAGAGGAATGC49350.3116714812068728No Hit
AGCCGAGCTGCCCTTT47890.3024508051671153No Hit
GGGGGGGGGGGGGGGG44700.2823042595733985No Hit
AATGGTGCTTCGTACA43910.2773149896614749No Hit
TCCCTGTGACCCGCAA37300.23556932622120275No Hit
GCTCCTAACCTATCTT34820.21990680801668314No Hit
TGCCGTTACAATCTGC33440.21119137449965203No Hit
GAGAGAAGACTCACGG32760.20689681305647725No Hit
CTTAATCTGGGAATTA32090.20266540692864335No Hit
TTGTCAACTAATACAG31150.19672880728660766No Hit
TCTTTCCACCGAGTGA30660.1936341968349082No Hit
GCTGTTCTGATAGGTA30410.19205531395138808No Hit
TAGCGCGACAAGACAT29210.18447667611049148No Hit
TCGTATACTTTCTGGA29110.18384512295708344No Hit
GTAATCGTGATCCTCC29030.183339880434357No Hit
GGGATGTGAAGGTGCA28800.18188730818151846No Hit
AGTCCTGCTCCTAGTA26980.17039304078949197No Hit
TGCAATGACACCTTGA24570.15517260979235797No Hit
GTTGTTGGATTCCATT24040.15182537807929528No Hit
GCAAATCTGGAATTGA23800.15030965051111597No Hit
TGTCAATCTGGTGTCC23290.1470887294287349No Hit
TTGCGTCACCACTCAA22510.14216261483215212No Hit
CCTTTCTACTCGGGCT22210.14026795537192796No Hit
TTGTTTGTGGCGCTGT22170.14001533411056474No Hit
TACGCCTTGCTGATCA21840.1379312087043182No Hit
TACAACCGATCGCTAA21110.13332087068443943No Hit
GGTTGAACTTCTTTGT20630.13028941554808077No Hit
CAAGTGGGATAGCGAG20270.1280158241958118No Hit
AGAACGCGAGGAGTCA19640.12403703932934108No Hit
CCCACCTCTCATGATC19460.12290024365320658No Hit
CTGCCATTGTCTTTGT19460.12290024365320658No Hit
AATCCAGACTACCAAC19390.12245815644582095No Hit
TTCCACTCTCGAATCT19210.12132136076968644No Hit
GAGGTGCCTTCGTACA18840.11898461410207667No Hit
TCTTTCCACTTCGCAA18780.11860568221003184No Hit
TAAGGGCGATTTCTTG18770.11854252689469105No Hit
GAGAGGTTGATGTGGG18540.11708995464185253No Hit
CCTTTCTACTCATTTC18500.11683733338048931No Hit
GTGGTAACTTTTCCGC18250.11525845049696919No Hit
CGGAATTTGAGAGGCT17700.11178490815322491No Hit
GCTCCTAACGAATAGT17230.10881660833220706No Hit
CGTTTGCTGGCTAATC17020.10749034671005016No Hit
AGCACATTGCTGGAAG16550.10452204688903231No Hit
TATTGCTTGTTCGTTT16420.10370102778960186No Hit
CCAGCTTTGGGAATGC16020.10117481517596966No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)