FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948970

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948970
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1057044
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA43710.41351164189948575No Hit
CATTCAACTAGGCATG36930.34937050870162456No Hit
GTCGACCGATGCTCAA35480.33565300971388135No Hit
GGGGGGGGGGGGGGGG31300.2961087712526631No Hit
ACTGGGCACTTCTCGC30510.2886350993903754No Hit
TGTAAGCTGTTGTGAC29780.2817290481758565No Hit
GCTTTAGGAACTAGTC20460.19355864088912098No Hit
TAGTTGCGACATAGCT17940.16971857368283627No Hit
CATCAGTGATTCGCAA16780.15874457449264176No Hit
CAGGAGCCTCGTGCAC14700.1390670587033274No Hit
CAGGAGCCTTCCAATG13020.12317368056580427No Hit
TCCTTAAACAGGGAGG11850.11210507793431494No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)