FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004948973

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948973
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1105580
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGGACG107004096.78539770979938No Hit
ATTGGCCG123511.1171511785669062No Hit
ATTGGACC35960.3252591399989146No Hit
ATTGGACA22960.2076738001772825No Hit
ATAGGACG22750.20577434468785613No Hit
ATTGCACG21120.1910309520794515No Hit
AATGGACG19670.17791566417626947No Hit
ATTGGAAG14200.12843937118978274No Hit
ATTCGACG13380.12102244975487979No Hit
ATTGAACG12020.10872121420430905No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)