FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948982

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948982
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4749016
Sequences flagged as poor quality0
Sequence length8
%GC24

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAGATTG463688297.63879506828363No Hit
TTAGATTA142360.2997673623335866No Hit
ATAGATTG112620.23714386306552768No Hit
TTAGATTC104900.22088786392802212No Hit
TTAGAATG95300.20067314997464736No Hit
TTAGATTT84630.1782053376952194No Hit
TTACATTG83710.17626809427468765No Hit
TAAGATTG78730.16578171141137446No Hit
TTAGATAG68780.14483000267844962No Hit
TTAGCTTG56980.11998275011075978No Hit
TTTGATTG52340.11021230503329534No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)