FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948985

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948985
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1797912
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT376472.0939289575908053No Hit
AAATAGGTGTTGCGTA147780.8219534660205838No Hit
TATCACTACTGGTCCG131150.729457281557718No Hit
ATGGGTTACCATGCGC121430.6753945688109317No Hit
GGCTTGCGACGACATT99000.5506387409394898No Hit
GTGTTGTGAGGGTAGT85130.47349369713311884No Hit
CTAATCTTGCCACTTC79970.44479373851445453No Hit
CTGCTTTCTCCACTTC73720.41003119173797165No Hit
AGAGAATTGCCTCCTA68010.3782721290029768No Hit
AGCCGAGCTGCCCTTT53430.29717805988279733No Hit
CTGGCCAGAGGAATGC53160.29567631786205334No Hit
AATGGTGCTTCGTACA48230.2682556209647636No Hit
GGGGGGGGGGGGGGGG45210.251458358362367No Hit
GCTCCTAACCTATCTT42480.23627407793039928No Hit
TCCCTGTGACCCGCAA40530.22542816333613658No Hit
GAGAGAAGACTCACGG38760.21558341008903661No Hit
TGCCGTTACAATCTGC36030.20039912965706888No Hit
GCTGTTCTGATAGGTA35580.19789622628916212No Hit
CTTAATCTGGGAATTA35010.19472588202314686No Hit
TTGTCAACTAATACAG34110.1897200752873333No Hit
TCTTTCCACCGAGTGA33410.1858266700483672No Hit
TCGTATACTTTCTGGA32300.17965284174086385No Hit
TAGCGCGACAAGACAT32000.17798423949559267No Hit
GTAATCGTGATCCTCC31690.17626001717547912No Hit
GGGATGTGAAGGTGCA29670.1650247620573198No Hit
AGTCCTGCTCCTAGTA29330.16313367951267915No Hit
GCAAATCTGGAATTGA27460.15273272551715547No Hit
TGCAATGACACCTTGA27200.15128660357125376No Hit
TTGCGTCACCACTCAA26630.14811625930523853No Hit
GTTGTTGGATTCCATT26560.14772691878134192No Hit
CCTTTCTACTCGGGCT24140.13426686066948773No Hit
TGTCAATCTGGTGTCC23970.13332131939716738No Hit
GGTTGAACTTCTTTGT23920.13304321902295552No Hit
TACAACCGATCGCTAA23750.1320976777506352No Hit
TACGCCTTGCTGATCA23430.13031783535567926No Hit
CAAGTGGGATAGCGAG23350.12987287475694026No Hit
TTGTTTGTGGCGCTGT22460.1249226880959691No Hit
TTCCACTCTCGAATCT22360.12436648734754537No Hit
AGAACGCGAGGAGTCA22120.12303160555132843No Hit
CCTTTCTACTCATTTC21610.12019498173436742No Hit
GCTCCTAACGAATAGT21430.1191938203872047No Hit
CCCACCTCTCATGATC21300.11847075941425386No Hit
CTGCCATTGTCTTTGT21140.1175808382167759No Hit
TAAGGGCGATTTCTTG20360.11324247237907083No Hit
TCTTTCCACTTCGCAA19870.11051708871179457No Hit
AATCCAGACTACCAAC19750.10984964781368611No Hit
GTGGTAACTTTTCCGC19580.10890410654136576No Hit
GAGAGGTTGATGTGGG19550.10873724631683865No Hit
CGGAATTTGAGAGGCT19140.10645682324830136No Hit
GCGACGTTGAGTGGTG18620.10356457935649797No Hit
CGTTTGCTGGCTAATC18190.10117291613827596No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)