FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948995

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948995
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4779785
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGGAAGA466717297.64397352600588No Hit
CAGGAAGC250830.5247725577614892No Hit
CAGGAACA123980.25938405179312457No Hit
CACGAAGA93510.19563641460860684No Hit
CAGGAATA93080.19473679255447682No Hit
CAGCAAGA81920.17138846203333413No Hit
CAGGAAAA75670.15831256008376945No Hit
CAGGATGA63860.13360433575987204No Hit
AAGGAAGA57690.1206958053552618No Hit
CAGTAAGA54620.11427292231763561No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)