FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949004

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949004
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3743646
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTTATG363822097.18386834652635No Hit
CCGGTATG143860.3842777869488728No Hit
CCGTTATA140130.37431423804494335No Hit
CCGTTTTG115550.308656320602963No Hit
CCGTTAAG77820.20787221868734385No Hit
CCGATATG68530.18305683817326746No Hit
CCCTTATG65200.17416176636359312No Hit
CCGTTATT54570.14576698758376191No Hit
CCGTTATC53800.1437101691773207No Hit
ACGTTATG50360.13452126616672624No Hit
CCGTAATG50250.13422743496580605No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)