FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949007

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949007
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3258932
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAGCCAC319104397.91683287653747No Hit
TAAGCCCC116570.3576938702617913No Hit
AAAGCCAC93520.2869651775489639No Hit
TAACCCAC88540.2716840977350862No Hit
TAAGCCAA71120.21823100328573902No Hit
TAAACCAC61690.18929514331689032No Hit
TAATCCAC37860.11617302846453992No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)