FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004949016

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949016
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16859199
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCCAAGG1657579098.31896521299737No Hit
ATCCAAGA512860.3042018781556585No Hit
AACCAAGG343920.20399545672365574No Hit
ATCCAACG260860.15472858467356607No Hit
ATCCAAGC228870.1357537804732004No Hit
ATACAAGG225360.13367183102827127No Hit
ATCAAAGG180940.10732419731210242No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)