FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004949018

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949018
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15952736
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCCTGA1560957797.848901906231No Hit
TATCCTCA847140.5310311660645547No Hit
TATCCTAA423870.26570363854827156No Hit
AATCCTGA376260.23585922815998459No Hit
TATCCTGC301240.18883281212702321No Hit
TAACCTGA255580.16021076259269884No Hit
TATCCAGA186300.11678247543242738No Hit
TATACTGA168830.1058313758843624No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)