FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949021

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949021
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3626540
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTTATG351168796.83298681387768No Hit
CCGGTATG158080.4358975773050897No Hit
CCGTTATA137560.3793147187126021No Hit
CCGTTTTG134960.372145350664821No Hit
CCGTTAAG79540.21932751327711814No Hit
CCGATATG77250.2130129544965725No Hit
CCCTTATG70220.1936280862750721No Hit
CCGTTATC57110.1574779266187606No Hit
CCGTAATG56110.154720477369614No Hit
ACGTTATG51970.14330463747814723No Hit
CCGTTATT50510.13927876157439323No Hit
CAGTTATG39010.10756809520920767No Hit
CCGTGATG37270.10277013351569265No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)