FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949023

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949023
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1381959
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT279172.0201033460471693No Hit
GGCTTGCGACGACATT119570.8652210376718846No Hit
AAATAGGTGTTGCGTA118110.8546563248258451No Hit
TATCACTACTGGTCCG98200.7105854804664972No Hit
ATGGGTTACCATGCGC96250.6964750763228141No Hit
GTGTTGTGAGGGTAGT63330.45826250995868906No Hit
CTAATCTTGCCACTTC62080.44921737909735376No Hit
CTGCTTTCTCCACTTC57750.4178850457936885No Hit
AGAGAATTGCCTCCTA53490.38705923981825796No Hit
GGGGGGGGGGGGGGGG46540.33676831222923403No Hit
CTGGCCAGAGGAATGC41410.29964709517431415No Hit
AGCCGAGCTGCCCTTT40250.291253213734995No Hit
AATGGTGCTTCGTACA36770.2660715694170377No Hit
GCTCCTAACCTATCTT33040.2390808989268133No Hit
TCCCTGTGACCCGCAA31530.22815438084632036No Hit
GAGAGAAGACTCACGG28790.20832745399827346No Hit
TTGTCAACTAATACAG27580.19957176732450094No Hit
TGCCGTTACAATCTGC27220.1969667696364364No Hit
CTTAATCTGGGAATTA27200.19682204754265503No Hit
GCTGTTCTGATAGGTA27050.19573663183929482No Hit
TCTTTCCACCGAGTGA25660.18567844632149No Hit
TAGCGCGACAAGACAT25340.18336289282098817No Hit
GGGATGTGAAGGTGCA24650.17836998058553113No Hit
GTAATCGTGATCCTCC24630.17822525849174975No Hit
AGTCCTGCTCCTAGTA23260.16831179506772634No Hit
TCGTATACTTTCTGGA23190.16780526773949156No Hit
GCAAATCTGGAATTGA22310.16143749561311152No Hit
TGCAATGACACCTTGA21050.1523200037048856No Hit
TTGCGTCACCACTCAA20210.1462416757660683No Hit
GTTGTTGGATTCCATT19790.1432025117966597No Hit
TGTCAATCTGGTGTCC19680.14240654028086216No Hit
CCTTTCTACTCGGGCT18710.13538751873246602No Hit
GGTTGAACTTCTTTGT18540.13415738093532442No Hit
TACAACCGATCGCTAA18510.13394029779465239No Hit
TACGCCTTGCTGATCA18380.1329996041850735No Hit
TTGTTTGTGGCGCTGT17850.12916446869986736No Hit
CAAGTGGGATAGCGAG17720.12822377509028848No Hit
TTCCACTCTCGAATCT17050.1233755849486128No Hit
CCTTTCTACTCATTTC16950.122651974479706No Hit
AGAACGCGAGGAGTCA16880.12214544715147121No Hit
GCTCCTAACGAATAGT16450.11903392213517187No Hit
TAAGGGCGATTTCTTG16330.1181655895724837No Hit
AATCCAGACTACCAAC16320.11809322852559302No Hit
CCCACCTCTCATGATC15760.11404100989971483No Hit
CTGCCATTGTCTTTGT15390.11136365116475959No Hit
CGGAATTTGAGAGGCT14840.10738379358577207No Hit
TCTTTCCACTTCGCAA14700.10637073892930254No Hit
ATGTGTGTGCCTTTGC13920.10072657727182935No Hit
CGTTTGCTGGCTAATC13920.10072657727182935No Hit
TATTGCTTGTTCGTTT13910.10065421622493864No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)