FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949026

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949026
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3141422
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCGGTGAGTCTTGA84450.26882730177607467No Hit
GGACACCTGGCTCCTT80820.25727202521660575No Hit
GGGGGGGGGGGGGGGG78540.25001416555941863No Hit
GTTAAGAGAGTACGTT58110.1849799231048869No Hit
CGCTTACTGATCACAC53100.1690317314897521No Hit
ATCTTACTGGTTTGGT50060.1593545852801693No Hit
TTGTGGTGAAAGACAT49650.15804944385058742No Hit
TACCAGTGATACGATC49510.1576037858014619No Hit
ATTCCTAACTGCGTGC48030.15289254356784923No Hit
ATAGATGGAGAGTAAT47470.1511099113713471No Hit
ATATGCCGAGAACAGC44630.14206941951765792No Hit
CTTGACGCTCAGGGTA41200.1311507973140826No Hit
TGGAACACTTGAGGCA40730.12965465957773264No Hit
AGGTAGCGATTGACCA39760.12656688595164867No Hit
GCGGTTCGAAGCAAGC39630.1261530606203178No Hit
AGCTCTGCTGGCCTGT39130.12456142473058378No Hit
CTTTCTGCTCTTGTGA38600.12287429068746573No Hit
GCTATACGACAGGTGA38500.12255596350951893No Hit
TGTGACTGACCGTTAA36430.11596659092602013No Hit
ACTGGAACTCTGGAAG35750.11380196611598187No Hit
ACGCTCTTGCCTCAAA34790.11074602520769257No Hit
TGTACCCTGCTGAGAG34310.10921805475354791No Hit
ACCCTTTCTAGGTGAC33320.10606661569187456No Hit
AGTTCACGACCAGAGA33160.10555729220715969No Hit
TTCCAAACTCCGCTAG32290.10278784575902251No Hit
TCAGTCCACCCAGCAC32070.10208752596753955No Hit
ACATGTGTGTCAATGC32070.10208752596753955No Hit
ACACTCCACCGTACAT31580.10052772279560021No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)