FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949029

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949029
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3088957
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAATGT302377197.8897084031924No Hit
GGTAATGA143240.4637163935917528No Hit
GGTATTGT59240.19177994384512312No Hit
GTTAATGT55460.1795428036065248No Hit
GGTAAAGT51300.1660754746666917No Hit
GGAAATGT48930.1584029819774118No Hit
GGTAATTT40590.1314035773239964No Hit
GGTTATGT36550.11832472902665853No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)