FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949033

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949033
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3273741
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTCGAG320689197.95799362258651No Hit
AGCACGAG62790.19179892361674303No Hit
AGCTCGAA53320.1628717726906313No Hit
AGCTCGCG51260.15657927734661967No Hit
AGCTCAAG49760.1519973632611743No Hit
AGCTCCAG42380.1294543459607831No Hit
AGCTCGGG39010.11916031231548249No Hit
AGCTCGAT38490.11757191543252811No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)