FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949042

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949042
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2811463
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATTTGG273907297.42514840138391No Hit
CTATTTGA202560.7204789819392964No Hit
CTTTTTGG49080.17457103294619208No Hit
CGATTTGG45980.1635447452091669No Hit
CTAATTGG43730.1555417944322938No Hit
CAATTTGG42010.1494239831717508No Hit
CTATATGG39300.13978487356938363No Hit
CTATTTTG38000.13516094645385696No Hit
CTAGTTGG32540.11574045256864487No Hit
CTATTTGC32450.11542033453756993No Hit
ATATTTGG30600.10884013056547427No Hit
CTATTAGG29380.10450075281090308No Hit
GTATTTGG29040.10329141802684226No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)