FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949043

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949043
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3945555
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT822942.085739522069772No Hit
AAATAGGTGTTGCGTA325880.82594210446946No Hit
TATCACTACTGGTCCG287190.7278823891695845No Hit
ATGGGTTACCATGCGC273430.6930077010712055No Hit
GGCTTGCGACGACATT210400.5332583122019589No Hit
GTGTTGTGAGGGTAGT186220.4719741582616387No Hit
CTAATCTTGCCACTTC178570.45258525099764163No Hit
CTGCTTTCTCCACTTC164350.41654469396574123No Hit
AGAGAATTGCCTCCTA149770.37959171776847617No Hit
AGCCGAGCTGCCCTTT117070.29671364358119456No Hit
CTGGCCAGAGGAATGC115670.29316534682699896No Hit
AATGGTGCTTCGTACA105710.26792174991857926No Hit
GGGGGGGGGGGGGGGG103390.26204171529734094No Hit
GCTCCTAACCTATCTT93320.2365193236439487No Hit
TCCCTGTGACCCGCAA90200.22861169087745578No Hit
GAGAGAAGACTCACGG86120.21827094033665734No Hit
TGCCGTTACAATCTGC81050.20542103709110632No Hit
CTTAATCTGGGAATTA78210.1982230636754525No Hit
GCTGTTCTGATAGGTA77120.19546046120254312No Hit
TTGTCAACTAATACAG76550.1940157975240492No Hit
TCTTTCCACCGAGTGA72830.18458746614861535No Hit
GTAATCGTGATCCTCC71830.1820529684670471No Hit
TCGTATACTTTCTGGA70240.1780231171533536No Hit
TAGCGCGACAAGACAT67390.17079979876088408No Hit
AGTCCTGCTCCTAGTA64850.16436217464970074No Hit
GGGATGTGAAGGTGCA64460.1633737205538891No Hit
GCAAATCTGGAATTGA60550.15346383461895727No Hit
TGCAATGACACCTTGA58260.147659834928166No Hit
GTTGTTGGATTCCATT58070.14717828036866804No Hit
TTGCGTCACCACTCAA56400.14294566924044907No Hit
TGTCAATCTGGTGTCC55310.14018306676753967No Hit
CCTTTCTACTCGGGCT53820.13640666522200298No Hit
TTGTTTGTGGCGCTGT52070.13197129427925855No Hit
TACGCCTTGCTGATCA51950.13166715455747036No Hit
GGTTGAACTTCTTTGT51650.1309068052529999No Hit
CAAGTGGGATAGCGAG51320.13007042101808236No Hit
TACAACCGATCGCTAA50040.126826263985675No Hit
CCCACCTCTCATGATC47930.12147847387756602No Hit
AATCCAGACTACCAAC47640.12074346954991123No Hit
TTCCACTCTCGAATCT47210.11965363554683689No Hit
TAAGGGCGATTTCTTG46930.11894397619599778No Hit
AGAACGCGAGGAGTCA46510.1178794871697391No Hit
CCTTTCTACTCATTTC46240.11719517279571569No Hit
GCTCCTAACGAATAGT45840.11618137372308839No Hit
TCTTTCCACTTCGCAA45500.1153196445113552No Hit
CTGCCATTGTCTTTGT45490.1152942995345395No Hit
GTGGTAACTTTTCCGC44140.11187272766442237No Hit
GCGACGTTGAGTGGTG43870.11118841329039895No Hit
GAGAGGTTGATGTGGG41750.10581527820547428No Hit
CGGAATTTGAGAGGCT41370.10485216908647833No Hit
CGTTTGCTGGCTAATC40220.10193749675267484No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)