FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949047

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949047
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1491881
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT276131.8508848896125092No Hit
AAATAGGTGTTGCGTA120500.8077051721953695No Hit
GGCTTGCGACGACATT109080.7311575118927046No Hit
TATCACTACTGGTCCG103980.6969724797085022No Hit
ATGGGTTACCATGCGC101660.6814216415384337No Hit
GTGTTGTGAGGGTAGT66430.4452768015679535No Hit
CTAATCTTGCCACTTC65140.43662999930959634No Hit
CTGCTTTCTCCACTTC58870.3946025185654888No Hit
AGAGAATTGCCTCCTA55180.3698686423380953No Hit
GGGGGGGGGGGGGGGG47520.31852406458692084No Hit
CTGGCCAGAGGAATGC43090.2888300072190745No Hit
AGCCGAGCTGCCCTTT42350.28386982607862155No Hit
AATGGTGCTTCGTACA38310.2567899182307436No Hit
TCCCTGTGACCCGCAA32750.21952153020247592No Hit
TGCCGTTACAATCTGC30150.2020938667360198No Hit
GAGAGAAGACTCACGG29700.1990775403668255No Hit
TTGTCAACTAATACAG27160.18205205374959532No Hit
CTTAATCTGGGAATTA27120.18178393585011138No Hit
TCTTTCCACCGAGTGA26900.18030928740294971No Hit
GCTGTTCTGATAGGTA25670.17206466199381854No Hit
TAGCGCGACAAGACAT25420.1703889251220439No Hit
GTAATCGTGATCCTCC25070.16804289350155943No Hit
GGGATGTGAAGGTGCA24560.16462439028313922No Hit
TCGTATACTTTCTGGA24480.16408815448417133No Hit
AGTCCTGCTCCTAGTA23650.15852470806987956No Hit
GCTCCTAACCTATCTT22240.14907355211307066No Hit
GCAAATCTGGAATTGA21940.14706266786694114No Hit
TGCAATGACACCTTGA21390.14337604674903695No Hit
GTTGTTGGATTCCATT21080.14129813302803643No Hit
TTGCGTCACCACTCAA20540.13767854138500324No Hit
TTGTTTGTGGCGCTGT19580.13124371179738867No Hit
TGTCAATCTGGTGTCC19540.13097559389790472No Hit
GGTTGAACTTCTTTGT18860.12641758960667773No Hit
CCTTTCTACTCGGGCT18600.12467482326003214No Hit
TACAACCGATCGCTAA18500.12400452851132229No Hit
CAAGTGGGATAGCGAG18420.12346829271235442No Hit
TACGCCTTGCTGATCA18320.12279799796364455No Hit
TAAGGGCGATTTCTTG18040.12092117266725698No Hit
CCCACCTCTCATGATC17590.11790484629806265No Hit
TTCCACTCTCGAATCT17540.11756969892370772No Hit
AATCCAGACTACCAAC17190.11522366730322324No Hit
GAGGTGCCTTCGTACA17050.11428525465502946No Hit
CCTTTCTACTCATTTC16960.11368198938119059No Hit
AGAACGCGAGGAGTCA16660.11167110513506104No Hit
GTGGTAACTTTTCCGC16650.11160407566019005No Hit
TCTTTCCACTTCGCAA16520.11073269248686726No Hit
CTGCCATTGTCTTTGT16290.1091910145648346No Hit
CGGAATTTGAGAGGCT15120.10134856600492934No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)