FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949049

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949049
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences702610
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA26780.3811502825180399No Hit
GTCGACCGATGCTCAA26400.37574187671681303No Hit
CATTCAACTAGGCATG24170.3440030742517186No Hit
ACTGGGCACTTCTCGC19740.28095244872688974No Hit
TGTAAGCTGTTGTGAC18840.2681430665660893No Hit
GGGGGGGGGGGGGGGG18700.26615049600774254No Hit
GCTTTAGGAACTAGTC16930.24095871109150166No Hit
CATCAGTGATTCGCAA10560.1502967506867252No Hit
TAGTTGCGACATAGCT10280.14631160957003175No Hit
CAGGAGCCTCGTGCAC9530.13563712443603138No Hit
CAGGAGCCTTCCAATG7820.11129929833051053No Hit
TCCTTAAACAGGGAGG7540.10731415721381705No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)