FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004949051

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949051
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences708921
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATGCGA69701398.32026417612117No Hit
TCCTGCGA21740.30666322481630537No Hit
TCATGCAA19030.2684361162950456No Hit
TCAAGCGA8850.12483760531850517No Hit
ACATGCGA7540.10635881854254566No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)