FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949056

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949056
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences708921
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTAGTGAACGTAA36820.5193808619013967No Hit
CGACCAGACGCGCTGT36390.5133153059367687No Hit
TAGCTTTACCCTATCC32380.4567504700805873No Hit
GATGAATGACTCCTAC32210.4543524595829436No Hit
CCAGGACTGTAACTCG26220.3698578544012661No Hit
ATCTGTACTGGGACTA23930.3375552424035964No Hit
GTTCTCGACCGTAGAG23290.3285274381771735No Hit
CTTCCTTTGGCTCAGC22760.32105128780216696No Hit
CGATCAAACCCGGCTA21090.29749436114884453No Hit
AGACCATTGAATCCAC20630.291005626861103No Hit
GGCAACAGAATAGCAA18080.25503546939644894No Hit
TGCTGCTACTTTCTTG18000.2539069938681461No Hit
ACAGCCGACTTGCGTA16990.23965999032332236No Hit
GGGGGGGGGGGGGGGG16910.2385315147950195No Hit
CGCGTTGGAGCGGTTC15960.22513086789642286No Hit
AACTTACCTCACCTAA15550.21934743081387068No Hit
ATCGAAAGATTTCCGC14590.2058057244742362No Hit
GTAACTGTGTGAAAGT13830.19508520695535891No Hit
CCCTGAACTAGCTTTG13490.19028918596007172No Hit
GGGTAGAACCAGTCTA13310.18775011602139027No Hit
CAATTCGGATAACGGG13150.18549316496478452No Hit
AGTGGAGTGAGTTGAA12940.18253091670298946No Hit
AAGAACCCTTAACCCA12050.16997662645062003No Hit
GTGAAGCGATCCCAGG12050.16997662645062003No Hit
TCCGGGAACGTTCTCC11890.16771967539401428No Hit
TTCCTAAACTAATGCC11470.16179517887042422No Hit
TTTAGTCTGAGCAATA11270.15897399004966703No Hit
TGGAACACTCCTAGTA11190.15784551452136417No Hit
CGCGATCGATATCTGG10900.15375479073126624No Hit
CTTTAACTGTCCGTAA10480.14783029420767618No Hit
CACATCCTGAGCCTAT10480.14783029420767618No Hit
TGCAGATACTGCCACG10390.14656075923833545No Hit
TGATAGAGAGACTGTT10180.14359851097654042No Hit
GAGTGTTACACCTGCG10030.1414826193609725No Hit
CATAGGTACAAGGTGC9890.1395077871864425No Hit
AGTCCTGCTCGAACGA9860.1390846088633289No Hit
TACGTTTACTGCACCG9740.1373918955708746No Hit
TCTCAGAGATGCATGT9700.13682765780672318No Hit
GCAACTTGAAGGTGCA9680.13654553892464744No Hit
TGCAGTATGACACCGC9660.13626342004257175No Hit
ATTTCTGACGGGTAGT9660.13626342004257175No Hit
TCAAAGCACTCTGCAA9530.13442964730907958No Hit
CTATTGGGACTTGTGA9520.1342885878680417No Hit
TGAACTGTGAACGTAA9440.13316011233973885No Hit
GGTCTAAACTCCTACC9420.13287799345766313No Hit
AGGTGTGGATCATGTG9320.13146739904728455No Hit
TGGCAATTGAGTGGTG9190.12963362631379238No Hit
TGAGGGATGTACGTTG9180.1294925668727545No Hit
CTTAGATCTTGTCACA9050.12765879413926234No Hit
CGAGTCTCTGCTACGC8950.12624819972888376No Hit
GGTCGCATGGTACTAC8930.12596608084680805No Hit
TCTATGGGATGCTCAA8790.12399124867227801No Hit
GGGTGTGCTCGCAAAG8740.1232859514670887No Hit
AGAGTACCTTAATCGC8730.12314489202605086No Hit
TCCATTTGAAATCTGC8700.12272171370293727No Hit
ATGTACGTGTACTTTC8680.12243959482086157No Hit
GGGATGTGACTGGAAG8670.1222985353798237No Hit
TTCTTAGACGTCCCGA8610.12145217873359654No Hit
GCATGATACTTGCGTA8600.1213111192925587No Hit
CACCAGGTGCGCCACA8580.12102900041048296No Hit
TCGGACCGATAGGCGA8460.11933628711802867No Hit
AGACTACTGGCCCTAG8300.11707933606142293No Hit
TACTGTTTGCTTAAGC8160.1151045038868929No Hit
TCCGGGTGAACACCTA8160.1151045038868929No Hit
AGCCAATTGTTATGGC8140.11482238500481717No Hit
GTAATCTCTACACAAA8110.1143992066817036No Hit
TTGCGGTCTTTTGGGT8110.1143992066817036No Hit
CTAGCTCACGAATAGT8090.1141170877996279No Hit
CGAGTCTCTTGGAACG8090.1141170877996279No Hit
ATGTCCAGACCGCTAG8000.11284755283028716No Hit
CTACAACGAATCTGTG7940.11200119618406No Hit
ACCAAGTTGAAGCTAA7910.11157801786094643No Hit
GGCTGACTGAAACTGA7880.11115483953783285No Hit
ACGAGGATGAACTAGA7810.11016742345056783No Hit
CTTTCGTCTCGAACGA7790.10988530456849212No Hit
AGGCGATGACCTGCGA7700.1086157695991514No Hit
TGTAAGCACGCGCTGT7650.10791047239396209No Hit
CATTCTATGCCTAGCG7600.10720517518877279No Hit
TGCTAGTGAAGGCGTA7580.10692305630669709No Hit
CACATTACTGATGGAC7560.10664093742462136No Hit
GGGCCTTGACTATCTT7410.10452504580905349No Hit
TGCGCAGACATCAGGG7360.10381974860386418No Hit
GTGTGATACCGTGCAC7360.10381974860386418No Hit
GATATGAGACCAACGC7260.10240915419348559No Hit
TCGTTGCTGTATTGCG7240.10212703531140989No Hit
ACCTCAGCTAATCCGT7220.10184491642933416No Hit
GTCTAATCTAAGTTCC7200.10156279754725843No Hit
TCATCATTGGACTCGC7190.10142173810622059No Hit
CATAGTCGAAGATTCC7100.10015220313687985No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)