FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949058

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949058
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5092099
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCACCCA482826394.81871817496086No Hit
CCCCCCCA1221172.3981662571760682No Hit
CCCACCAA415830.8166180586826768No Hit
CCCACCCC185960.3651932140360979No Hit
CCCACACA173300.3403311679525477No Hit
CCCAACCA113090.22208916205281948No Hit
ACCACCCA105780.2077335888402798No Hit
CCAACCCA98160.192769229349233No Hit
CACACCCA89080.17493768286908798No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)