FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949069

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949069
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3729041
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCACCCA354877895.1659689448306No Hit
CCCCCCCA813012.180212016977019No Hit
CCCACCAA303060.81270224703885No Hit
CCCACACA120520.3231930139679344No Hit
CCCAACCA95680.25658071337912347No Hit
CCCACCCC95330.25564213426454685No Hit
CCAACCCA84120.2255807860519635No Hit
ACCACCCA68590.1839346899108913No Hit
CACACCCA56350.15111123744683955No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)