FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004949073

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949073
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433276
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGAATGACTCCTAC29300.6762433183467351No Hit
CTCCTAGTGAACGTAA23050.5319934637505885No Hit
TAGCTTTACCCTATCC20410.4710623251691763No Hit
CGACCAGACGCGCTGT20170.4655231307526842No Hit
CCAGGACTGTAACTCG15970.3685872284640737No Hit
GTTCTCGACCGTAGAG15030.34689205033281323No Hit
ATCTGTACTGGGACTA14270.32935126801392184No Hit
CTTCCTTTGGCTCAGC13850.31965767778506077No Hit
CGATCAAACCCGGCTA13100.30234769523352323No Hit
TGCTGCTACTTTCTTG11210.2587265392036485No Hit
ACAGCCGACTTGCGTA10580.24418615386035689No Hit
GGCAACAGAATAGCAA10390.23980095828063405No Hit
GGGGGGGGGGGGGGGG10270.23703136107238806No Hit
AACTTACCTCACCTAA9290.21441298387171226No Hit
GTAACTGTGTGAAAGT8630.19918019922635916No Hit
CGCGTTGGAGCGGTTC8590.19825700015694386No Hit
ATCGAAAGATTTCCGC8370.19317940527515948No Hit
CCCTGAACTAGCTTTG8340.19248700597309798No Hit
CAATTCGGATAACGGG8280.19110220736897496No Hit
AGTGGAGTGAGTTGAA7920.18279341574423694No Hit
GTGAAGCGATCCCAGG7580.17494622365420653No Hit
GGGTAGAACCAGTCTA7340.16940702923771453No Hit
TTCCTAAACTAATGCC7280.16802223063359153No Hit
AAGAACCCTTAACCCA7230.16686823179682234No Hit
CGCGATCGATATCTGG7190.16594503272740702No Hit
TCCGGGAACGTTCTCC7140.16479103389063784No Hit
TGGAACACTCCTAGTA6840.15786704087002282No Hit
CTTTAACTGTCCGTAA6790.15671304203325362No Hit
TTTAGTCTGAGCAATA6710.15486664389442295No Hit
AGTCCTGCTCGAACGA6450.14886584994322327No Hit
CATAGGTACAAGGTGC6310.14563465320026955No Hit
TGCAGATACTGCCACG6240.14401905482879274No Hit
CACATCCTGAGCCTAT6240.14401905482879274No Hit
TCAAAGCACTCTGCAA6170.1424034564573159No Hit
GCAACTTGAAGGTGCA6150.14194185692260822No Hit
TGATAGAGAGACTGTT6100.14078785808583905No Hit
TCTCAGAGATGCATGT6090.1405570583184852No Hit
TACGTTTACTGCACCG6050.13963385924906987No Hit
CTATTGGGACTTGTGA6040.13940305948171605No Hit
ATTTCTGACGGGTAGT6020.13894145994700838No Hit
TGCAGTATGACACCGC5920.13663346227347004No Hit
GAGTGTTACACCTGCG5830.13455626436728552No Hit
ATGTACGTGTACTTTC5830.13455626436728552No Hit
CTTAGATCTTGTCACA5820.1343254645999317No Hit
CGAGTCTCTGCTACGC5780.13340226553051635No Hit
AGGTGTGGATCATGTG5770.1331714657631625No Hit
AGACCATTGAATCCAC5720.13201746692639335No Hit
TGAACTGTGAACGTAA5690.13132506762433183No Hit
GGTCGCATGGTACTAC5670.13086346808962418No Hit
TTCTTAGACGTCCCGA5670.13086346808962418No Hit
GGTCTAAACTCCTACC5600.12924786971814733No Hit
TGGCAATTGAGTGGTG5570.12855547041608584No Hit
AGAGTACCTTAATCGC5430.12532427367313215No Hit
GCATGATACTTGCGTA5370.12393947506900913No Hit
TCTATGGGATGCTCAA5370.12393947506900913No Hit
TCCGGGTGAACACCTA5300.12232387669753228No Hit
GGGTGTGCTCGCAAAG5280.12186227716282462No Hit
CATTCTATGCCTAGCG5260.12140067762811695No Hit
TCCATTTGAAATCTGC5260.12140067762811695No Hit
CTACAACGAATCTGTG5170.11932347972193244No Hit
GGCTGACTGAAACTGA5150.11886188018722477No Hit
TACTGTTTGCTTAAGC5130.1184002806525171No Hit
TGAGGGATGTACGTTG5130.1184002806525171No Hit
GGGATGTGACTGGAAG5110.11793868111780942No Hit
CACCAGGTGCGCCACA4990.11516908390956343No Hit
TGCTAGTGAAGGCGTA4980.11493828414220958No Hit
GATATGAGACCAACGC4960.11447668460750193No Hit
CACATTACTGATGGAC4960.11447668460750193No Hit
TTGCGGTCTTTTGGGT4940.11401508507279424No Hit
CGAGTCTCTTGGAACG4870.1123994867013174No Hit
TGTAAGCACGCGCTGT4860.11216868693396356No Hit
GTAATCTCTACACAAA4820.11124548786454823No Hit
TGCGCAGACATCAGGG4810.1110146880971944No Hit
CATAGTCGAAGATTCC4780.11032228879513288No Hit
CTTTCGTCTCGAACGA4770.11009148902777907No Hit
CTAGCTCACGAATAGT4720.10893749019100989No Hit
ATGTCCAGACCGCTAG4700.10847589065630223No Hit
CTCAATTTGGAATCTC4660.10755269158688688No Hit
TAGTACCGAACGAGCA4640.1070910920521792No Hit
AGACTACTGGCCCTAG4610.10639869275011771No Hit
ATAGCCAACCGTTCTC4600.10616789298276387No Hit
ACCTCAGCTAATCCGT4570.10547549368070236No Hit
ACCAAGTTGAAGCTAA4560.10524469391334855No Hit
TTTAGGGACCACAGTT4500.10385989530922553No Hit
GTATTCACTGCTCCTT4490.10362909554187169No Hit
TCGGACCGATAGGCGA4450.10270589647245637No Hit
AGGCGATGACCTGCGA4420.10201349717039485No Hit
TTGTGCGCTATGTGGG4400.10155189763568719No Hit
AAAGCCTTGAACCAAA4390.10132109786833335No Hit
GGGCCTTGACTATCTT4380.1010902981009795No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)