FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949082

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949082
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2033672
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGCTAA199381098.03990023956666No Hit
CGTGCAAA79080.38885326640677553No Hit
CGAGCTAA43370.21325956201393342No Hit
AGTGCTAA33620.1653167275745548No Hit
CGTGGTAA25690.12632322223052686No Hit
CGGGCTAA23520.1156528683091472No Hit
CGTCCTAA23260.11437439272409711No Hit
CCTGCTAA21020.10335983383751166No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)