FastQCFastQC Report
Sat 10 Sep 2022
EGAF00004949086

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949086
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17353494
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACCATC1694859897.6667753479501No Hit
CAACCATA673370.38803136705495733No Hit
CAACCAAC559280.32228668186360626No Hit
CAACCCTC554890.3197569319469612No Hit
CCACCATC529710.3052468857280269No Hit
CACCCATC326650.18823298639455546No Hit
AAACCATC238140.13722884855349593No Hit
CAACAATC187690.10815689336107184RNA PCR Primer, Index 36 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)