FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949090

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949090
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3364618
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT97070.288502290601786No Hit
TCGCGGTGAGTCTTGA90910.27019412010516497No Hit
GGGGGGGGGGGGGGGG84860.25221288122455504No Hit
GTTAAGAGAGTACGTT62770.1865590685183281No Hit
CGCTTACTGATCACAC57890.17205519318983611No Hit
ATCTTACTGGTTTGGT55340.16447632390957903No Hit
TACCAGTGATACGATC55150.16391162384555988No Hit
TTGTGGTGAAAGACAT53640.15942374438940765No Hit
ATAGATGGAGAGTAAT51710.1536875805812131No Hit
ATTCCTAACTGCGTGC50610.1504182644211022No Hit
ATATGCCGAGAACAGC49730.14780281149301347No Hit
TGGAACACTTGAGGCA46110.13704378922064853No Hit
CTTGACGCTCAGGGTA43660.12976213050040153No Hit
CTTTCTGCTCTTGTGA43280.12863273037236322No Hit
NNNNNNNNNNNNNNNN42720.1269683512363068No Hit
AGGTAGCGATTGACCA42460.12619560378028055No Hit
AGCTCTGCTGGCCTGT41690.12390708246820294No Hit
GCGGTTCGAAGCAAGC40420.12013250835607489No Hit
GCTATACGACAGGTGA40090.11915171350804163No Hit
TGTGACTGACCGTTAA39080.1161498868519398No Hit
ACGCTCTTGCCTCAAA38330.1139208076518642No Hit
ACTGGAACTCTGGAAG37720.11210782323580269No Hit
AGTTCACGACCAGAGA36810.10940320713971095No Hit
ACCCTTTCTAGGTGAC36650.10892767024369483No Hit
TGTACCCTGCTGAGAG36260.10776854905965551No Hit
TTCCAAACTCCGCTAG36000.10699580160362929No Hit
TCCCAGACTCCTAACA34660.10301318009949421No Hit
TCAGTCCACCCAGCAC34630.10292401693149117No Hit
ACATGTGTGTCAATGC34610.10286457481948916No Hit
ACACTCCACCGTACAT34000.10105159040342768No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)