FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949093

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949093
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8069875
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTATCCC787053797.52985021453244No Hit
TTTATCCA614650.7616598770117257No Hit
GTTATCCC246110.30497374494648305No Hit
ATTATCCC196240.24317600954165955No Hit
TTTAACCC144990.17966821047413994No Hit
TTTATACC134710.16692947536362088No Hit
TATATCCC117390.14546693722021717No Hit
TTAATCCC90990.11275267584689973No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)