FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949103

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949103
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3782771
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACGCGAA371719698.2664824278287No Hit
AACGCAAA92320.24405389594030408No Hit
AACGCCAA72360.19128834391508234No Hit
AACGAGAA55160.14581903054665482No Hit
AACCCGAA51240.13545625680222248No Hit
AACGCGAT50280.13291843466072886No Hit
GACGCGAA38150.10085199447706457No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)