FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949111

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949111
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13185876
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGGTTTA1290252997.8511325299889No Hit
GAGGTTAA1413021.0716163264389866No Hit
GAGGTATA188190.14272089317387787No Hit
GACGTTTA153540.11644277558806104No Hit
GAGGTTTT132990.10085791797223029No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)