FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949117

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949117
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3900765
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT108980.27938109575942155No Hit
TCGCGGTGAGTCTTGA108720.2787145598363398No Hit
GGGGGGGGGGGGGGGG97620.2502586031201572No Hit
GTTAAGAGAGTACGTT76670.19655118931799276No Hit
CGCTTACTGATCACAC72180.18504062664631168No Hit
TACCAGTGATACGATC66000.1691975804745992No Hit
TTGTGGTGAAAGACAT63820.16360893311952912No Hit
ATCTTACTGGTTTGGT63150.16189132131774153No Hit
ATTCCTAACTGCGTGC60870.15604631399225535No Hit
ATAGATGGAGAGTAAT59960.15371343826146922No Hit
ATATGCCGAGAACAGC57460.14730443900106774No Hit
TGGAACACTTGAGGCA56250.14420248335903343No Hit
GCGGTTCGAAGCAAGC53190.13635786826430202No Hit
CTTTCTGCTCTTGTGA52370.1342557165068903No Hit
CTTGACGCTCAGGGTA52300.13407626452759908No Hit
AGCTCTGCTGGCCTGT49350.1265136454003253No Hit
GCTATACGACAGGTGA49270.12630855742399247No Hit
AGGTAGCGATTGACCA48840.12520620955120343No Hit
ACTGGAACTCTGGAAG47720.12233497788254355No Hit
AGTTCACGACCAGAGA47630.12210425390916911No Hit
TGTGACTGACCGTTAA47500.12177098594762822No Hit
TGTACCCTGCTGAGAG44260.11346492290614789No Hit
ACGCTCTTGCCTCAAA43970.11272147899194132No Hit
ACCCTTTCTAGGTGAC43950.11267020699785811No Hit
TTCCAAACTCCGCTAG43330.11108077518127855No Hit
TCAGTCCACCCAGCAC42350.10856844747120116No Hit
ACACTCCACCGTACAT41550.10651756770787268No Hit
ACATGTGTGTCAATGC40990.10508195187354276No Hit
CACAGCTCTCTCTGGG40520.10387706001258727No Hit
CAGTGGAGAGATCATC40240.10315925209542232No Hit
TCCCAGACTCCTAACA40150.10292852812204785No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)