FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949124

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949124
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3338984
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG98100.2938019469395481No Hit
ACTGTCCACAGGTCCC60960.1825705064774195No Hit
CTGGTGGACGCGGTTC59180.17723954352581506No Hit
GTGGTTAACGGCCTGT51350.15378929638476854No Hit
GTGTACTGACAGTCCG42280.12662534471563805No Hit
AAGACAAACAGTACGG42120.12614615703459495No Hit
GGGTGAATGGACAAAT36700.10991367433926008No Hit
AGCTATCGACGGTTTA34230.1025162145131573No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)