FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949130

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949130
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2811463
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT79810.283873556223219No Hit
TCGCGGTGAGTCTTGA75040.26690730057624806No Hit
GGGGGGGGGGGGGGGG74310.2643107876575292No Hit
NNNNNNNNNNNNNNNN63450.22568321190782167No Hit
GTTAAGAGAGTACGTT52580.18702006748799468No Hit
CGCTTACTGATCACAC49440.17585150507049177No Hit
TACCAGTGATACGATC44850.1595254854856706No Hit
ATCTTACTGGTTTGGT43800.15579077512312983No Hit
TTGTGGTGAAAGACAT43070.153194262204411No Hit
ATTCCTAACTGCGTGC42850.15241175146178343No Hit
ATAGATGGAGAGTAAT42810.15226947678130567No Hit
ATATGCCGAGAACAGC40630.14451550669526864No Hit
TGGAACACTTGAGGCA38490.1369038112897093No Hit
GCGGTTCGAAGCAAGC38290.13619243788732058No Hit
CTTGACGCTCAGGGTA36920.13131953008095784No Hit
AGGTAGCGATTGACCA36000.12804721242996975No Hit
CTTTCTGCTCTTGTGA35440.1260553669032813No Hit
GCTATACGACAGGTGA34920.12420579605707065No Hit
AGCTCTGCTGGCCTGT33700.11986641830249943No Hit
TGTGACTGACCGTTAA32290.11485123581565897No Hit
ACTGGAACTCTGGAAG31910.1134996263511204No Hit
AGTTCACGACCAGAGA31630.11250370358777619No Hit
TGTACCCTGCTGAGAG30550.1086622872148771No Hit
ACGCTCTTGCCTCAAA30360.10798648248260781No Hit
ACCCTTTCTAGGTGAC29990.10667044168818868No Hit
TCAGTCCACCCAGCAC29940.1064925983375915No Hit
TTCCAAACTCCGCTAG28890.10275788797505071No Hit
ACATGTGTGTCAATGC28650.10190423989218425No Hit
CACAGCTCTCTCTGGG28290.10062376776788454No Hit
ACACTCCACCGTACAT28150.10012580638621245No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)