FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949137

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949137
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3527015
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATCCTT343536197.4013719816899No Hit
TCATCCTA299170.8482243483512262No Hit
TCCTCCTT143550.4070013878591387No Hit
TCATACTT59350.16827260445447498No Hit
TCATCCAT58670.16634462853149193No Hit
TCAACCTT57500.163027375840477No Hit
ACATCCTT54970.15585417130349602No Hit
TAATCCTT52900.14998518577323883No Hit
TCATCATT48640.13790698366749218No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)