FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004949139

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949139
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14820299
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTGACG1456057498.24750499298294No Hit
AGCTGCCG801380.5407313307241642No Hit
AGCTGACA384650.2595426718448798No Hit
AGCAGACG260210.1755767545580558No Hit
AGCTGACC195630.1320013853971502No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)