FastQCFastQC Report
Sat 10 Sep 2022
EGAF00004949145

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949145
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17181572
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTGCGT1677281397.62094527788261No Hit
CGCTGCGT578440.3366630247802704No Hit
AGCTGCGA550730.32053528047375407No Hit
AGCAGCGT387580.22557889347959545No Hit
AGCTGCGG372810.2169824740134372No Hit
AGCGGCGT277770.16166739574236863No Hit
AGGTGCGT244940.14255971455929645No Hit
AGCTGGGT235190.1368850300775738No Hit
TGCTGCGT192670.11213758554805113No Hit
ACCTGCGT181030.10536288530525612No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)