FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949148

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949148
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2532781
Sequences flagged as poor quality0
Sequence length8
%GC74

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCACCT248748898.21172853081256No Hit
GCGCACCA161270.6367309293618358No Hit
GCGCCCCT48030.1896334503456872No Hit
GCGCACAT26550.10482548629352478No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)