FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949152

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949152
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4090311
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT123760.30256867998545833No Hit
TCGCGGTGAGTCTTGA112260.27445345842895563No Hit
GGGGGGGGGGGGGGGG105250.25731539728886144No Hit
GTTAAGAGAGTACGTT78570.1920880832777752No Hit
CGCTTACTGATCACAC74530.1822110837048821No Hit
TACCAGTGATACGATC67210.16431513398369954No Hit
ATCTTACTGGTTTGGT65230.1594744262722321No Hit
TTGTGGTGAAAGACAT64780.15837426542871677No Hit
ATAGATGGAGAGTAAT62900.15377803790469724No Hit
ATATGCCGAGAACAGC61990.1515532681989218No Hit
ATTCCTAACTGCGTGC61710.1508687236740678No Hit
TGGAACACTTGAGGCA57660.14096727608242993No Hit
CTTGACGCTCAGGGTA55580.13588208818351466No Hit
CTTTCTGCTCTTGTGA53870.13170147697815643No Hit
GCGGTTCGAAGCAAGC53280.13025904387221413No Hit
AGGTAGCGATTGACCA51270.12534499210451233No Hit
AGCTCTGCTGGCCTGT50980.12463599956091358No Hit
GCTATACGACAGGTGA50320.12302243032375779No Hit
TGTGACTGACCGTTAA47910.1171304578062646No Hit
ACGCTCTTGCCTCAAA47340.11573692073781187No Hit
AGTTCACGACCAGAGA46570.11385442329446344No Hit
ACTGGAACTCTGGAAG46300.11319432678835424No Hit
ACCCTTTCTAGGTGAC45500.11123848528877144No Hit
TGTACCCTGCTGAGAG45140.11035835661395918No Hit
TTCCAAACTCCGCTAG45040.11011387642651134No Hit
TCAGTCCACCCAGCAC44060.10771797058952241No Hit
ACACTCCACCGTACAT43290.10583547314617398No Hit
GGGAGCTCTTGATGAA42230.10324398315922677No Hit
TCCCAGACTCCTAACA42220.10321953514048199No Hit
ACATGTGTGTCAATGC41770.10211937429696666No Hit
CACAGCTCTCTCTGGG41420.1012636936408992No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)