FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949156

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949156
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3279073
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGAAGGG320914197.86732408824079No Hit
GAGAAGGA198850.6064213879959366No Hit
GTGAAGGG71760.21884233745329854No Hit
GAGATGGG48030.14647432368843266No Hit
GAGCAGGG47040.14345517772858365No Hit
GAGAAGGC37100.11314173243474604TruSeq Adapter, Index 20 (100% over 8bp)
GAGAACGG34500.10521266223716276No Hit
GAGAAGCG33230.10133961640988169No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)