FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949161

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949161
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1114095
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA48590.4361387493885171No Hit
CATTCAACTAGGCATG42560.3820141011314116No Hit
GGGGGGGGGGGGGGGG35760.3209780135446259No Hit
GTCGACCGATGCTCAA35250.316400306975617No Hit
TGTAAGCTGTTGTGAC33650.30203887460225565No Hit
ACTGGGCACTTCTCGC33270.2986280344135823No Hit
GCTTTAGGAACTAGTC20940.18795524618636653No Hit
TAGTTGCGACATAGCT19650.17637634133534394No Hit
CATCAGTGATTCGCAA18100.16246370372365013No Hit
CAGGAGCCTCGTGCAC15870.14244745735327777No Hit
CAGGAGCCTTCCAATG14580.13086855250225518No Hit
TCCTTAAACAGGGAGG12240.10986495765621423No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)