FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949170

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949170
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences702659
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGACCAGACGCGCTGT37420.5325485050358709No Hit
CTCCTAGTGAACGTAA36930.5255749944140756No Hit
TAGCTTTACCCTATCC30810.43847726991328656No Hit
GATGAATGACTCCTAC29220.41584893952827756No Hit
CCAGGACTGTAACTCG25230.3590646387508023No Hit
GTTCTCGACCGTAGAG23080.3284665819408845No Hit
ATCTGTACTGGGACTA22980.3270434165078651No Hit
CTTCCTTTGGCTCAGC22760.3239124525552224No Hit
CGATCAAACCCGGCTA21010.2990070574773824No Hit
AGACCATTGAATCCAC20730.29502219426492793No Hit
TGCTGCTACTTTCTTG18580.2644241374550102No Hit
GGCAACAGAATAGCAA17540.2496232169516081No Hit
GGGGGGGGGGGGGGGG16670.23724167768433904No Hit
ACAGCCGACTTGCGTA16090.22898731817282636No Hit
AACTTACCTCACCTAA15640.22258307372423894No Hit
CGCGTTGGAGCGGTTC14440.20550508852800578No Hit
GTAACTGTGTGAAAGT14380.2046511892681941No Hit
ATCGAAAGATTTCCGC14280.2032280238351747No Hit
AGTGGAGTGAGTTGAA13710.1951159808669639No Hit
CCCTGAACTAGCTTTG13610.1936928154339445No Hit
CAATTCGGATAACGGG13370.19027721839469786No Hit
AAGAACCCTTAACCCA12180.17334154974176663No Hit
TTCCTAAACTAATGCC11810.16807583763959474No Hit
GGGTAGAACCAGTCTA11800.1679335210962928No Hit
TCCGGGAACGTTCTCC11520.1639486578838384No Hit
CGCGATCGATATCTGG11490.16352170825393256No Hit
TTTAGTCTGAGCAATA11440.16281012553742286No Hit
TGGAACACTCCTAGTA11380.1619562262776112No Hit
GTGAAGCGATCCCAGG11110.15811367960845873No Hit
TGATAGAGAGACTGTT11060.157402096891949No Hit
TGCAGATACTGCCACG10900.15512503219911794No Hit
CACATCCTGAGCCTAT10670.15185175170317325No Hit
CTTTAACTGTCCGTAA10510.14957468701034216No Hit
GCAACTTGAAGGTGCA10190.14502055762467997No Hit
AGTCCTGCTCGAACGA9920.1411780109555275No Hit
CATAGGTACAAGGTGC9880.14060874478231972No Hit
TCAAAGCACTCTGCAA9820.13975484552250808No Hit
TGCAGTATGACACCGC9750.13875862971939448No Hit
ATTTCTGACGGGTAGT9680.13776241391628086No Hit
TACGTTTACTGCACCG9620.13690851465646922No Hit
TGAACTGTGAACGTAA9570.1361969319399595No Hit
GAGTGTTACACCTGCG9540.13576998231005366No Hit
TCTCAGAGATGCATGT9330.13278133490071287No Hit
CTTAGATCTTGTCACA9170.13050427020788177No Hit
CTATTGGGACTTGTGA9160.13036195366457984No Hit
TGAGGGATGTACGTTG9120.12979268749137204No Hit
ATGTACGTGTACTTTC9070.12908110477486234No Hit
GGTCTAAACTCCTACC9040.12865415514495654No Hit
TGGCAATTGAGTGGTG8980.12780025588514485No Hit
TCTATGGGATGCTCAA8860.12609245736552155No Hit
CGAGTCTCTGCTACGC8830.12566550773561572No Hit
AGAGTACCTTAATCGC8740.12438465884589824No Hit
AGGTGTGGATCATGTG8690.1236730761293885No Hit
GCATGATACTTGCGTA8650.12310380995618074No Hit
TTCTTAGACGTCCCGA8650.12310380995618074No Hit
GGTCGCATGGTACTAC8580.12210759415306714No Hit
GGGTGTGCTCGCAAAG8560.12182296106646325No Hit
CACCAGGTGCGCCACA8420.11983052946023605No Hit
TCCATTTGAAATCTGC8270.1176957813107069No Hit
CTACAACGAATCTGTG8090.11513408353127193No Hit
GTAATCTCTACACAAA8080.11499176698796998No Hit
TCCGGGTGAACACCTA8070.11484945044466803No Hit
CATTCTATGCCTAGCG7950.11314165192504472No Hit
TTGCGGTCTTTTGGGT7950.11314165192504472No Hit
TCGGACCGATAGGCGA7920.11271470229513889No Hit
CTAGCTCACGAATAGT7900.11243006920853502No Hit
TACTGTTTGCTTAAGC7840.11157616994872335No Hit
AGACTACTGGCCCTAG7810.11114922031881752No Hit
ACCAAGTTGAAGCTAA7810.11114922031881752No Hit
AGCCAATTGTTATGGC7780.11072227068891169No Hit
GGCTGACTGAAACTGA7770.11057995414560974No Hit
GGGATGTGACTGGAAG7610.10830288945277866No Hit
GCCATTCACCGGAAGT7580.10787593982287283No Hit
CGAGTCTCTTGGAACG7480.1064527743898534No Hit
CTTTCGTCTCGAACGA7460.10616814130324952No Hit
GATATGAGACCAACGC7350.10460265932692814No Hit
CTCAATTTGGAATCTC7340.10446034278362619No Hit
TCATCATTGGACTCGC7320.1041757096970223No Hit
AAAGCCTTGAACCAAA7320.1041757096970223No Hit
CACATTACTGATGGAC7270.10346412698051259No Hit
CTAACAGTGCATGATC7270.10346412698051259No Hit
TGTAAGCACGCGCTGT7260.10332181043721064No Hit
TAGTACCGAACGAGCA7250.10317949389390871No Hit
AGGCGATGACCTGCGA7240.10303717735060677No Hit
ATGTCCAGACCGCTAG7190.10232559463409704No Hit
GGGCCTTGACTATCTT7170.10204096154749316No Hit
GTCTAATCTAAGTTCC7160.10189864500419123No Hit
ACGAGGATGAACTAGA7120.10132937883098345No Hit
TTTAGGGACCACAGTT7100.10104474574437955No Hit
AGTTTGCGAAACGAAT7090.10090242920107763No Hit
GTATTCACTGCTCCTT7040.1001908464845679No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)