FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949171

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949171
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6158844
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGTTT602816697.87820571522838No Hit
GCACGTTA594880.9658955479307482No Hit
GCACGTAT102540.1664922832921243No Hit
GCACGATT82030.13319057927104502No Hit
GCCCGTTT81210.13185916058273273No Hit
GCACGGTT72880.11833389512707256No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)