FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004949176

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949176
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences702659
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATGCGA69062098.28665113518791No Hit
TCCTGCGA23570.33544009256267976No Hit
TCATGCAA19810.2819290722811492No Hit
TCAAGCGA10000.14231654330194304No Hit
ACATGCGA8420.11983052946023605No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)